single-cell Hi-C: pipeline and analysis

The code used to process and analyze single-cell Hi-C libraries in the paper:

Cell-cycle dynamics of chromosomal organization at single-cell resolution by Takashi Nagano, Yaniv Lubling, Csilla VĂ¡rnai, Carmel Dudley, Wing Leung, Yael Baran, Netta Mendelson Cohen, Steven Wingett, Peter Fraser & Amos Tanay, Nature, 2017

is available in the public repository: schic2