Recent highlights

Single-cell analysis of clonal maintenance of transcriptional and epigenetic states in cancer cells. Meir Z, Mukamel Z, Chomsky E, Lifshitz A, Tanay A.Nature Genetics. 2020

MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions.
Baran Y, Bercovich A, Sebe-Pedros A, Lubling Y, Giladi A, Chomsky E, Meir Z, Hoichman M, Lifshitz A, Tanay A.
Genome Biol. 2019

Cnidarian cell type diversity revealed by whole-organism single-cell RNA-seq analysis.  Sebé-Pedrós A, Saudemont B, Chomsky E, Plessier F, Mailhé MP, Renno J, Loe-Mie Y, Lifshitz A, Mukamel Z, Schmutz S, Novault S, Steinmetz PRH, Spitz F, Tanay A, Marlow H. Cell. 2018

Cell-cycle dynamics of chromosomal organization at single-cell resolution.
Nagano T, Lubling Y, Várnai C, Dudley C, Leung W, Baran Y, Mendelson Cohen N, Wingett S, Fraser P, Tanay A. Nature (2017)

Capturing pairwise and multi-way chromosomal conformations using chromosomal walks.
Olivares-Chauvet P, Mukamel Z, Lifshitz A, Schwartzman O, Elkayam NO, Lubling Y, Deikus G, Sebra RP, Tanay A. Nature (2016)

Complete list